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Liu, L., Chen, X.M., Li, J., Wang, H., Buehl, C.J., Goff, N.J., Meek, K., Yang, W. & Gellert, M. (2021) Autophosphorylation transforms DNA-PK from protecting to processing of DNA ends. Mol Cell, in press.

Brant, A.C., Tian, W., Majerciak, V., Yang, W. and Zheng Z.M. (2021) SARS-CoV-2: from its discovery to genome structure, transcription, and replication. Cell Biosci, 11, 136. DOI: 10.1186/s13578-021-00643-z.

Chen, X.M., Gellert, M. & Yang, W. (2021) Inner workings of RAG recombinase and its specialization for adaptive immunity. Curr Opin Struct Biol, 71, 79-86. [LINK]

Vaisman, A., Łazowski, K., Reijns, M.A.M., et al., Yang, W., Makiela-Dzbenska, K., Woodgate, R. (2021) Novel Escherichia coli active site dnaE alleles with altered base and sugar selectivity. Mol Microbiol, 116, 909-925. [LINK]

Gregory, M.T., Gao, Y., Cui, Q. & Yang, W. (2021) Multiple deprotonation paths of the nucleophile 3-OH in the DNA synthesis reaction. PNAS, 118, 10.1073/pnas.2103990118. [LINK]

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Choi, W.S., Liu, B., Shen, Z., Y Yang, W. (2021) Structure of human BCCIP and implications for binding and modification of partner proteins. Protein Science, 30, 693-699. [LINK]

Chen, X., Xu, X., Chen, Y., Cheung, J.C., Wang, H., Jiang, J., de Val, N., Fox, T., Gellert, M. & Yang, W. (2020) Structure of an activated DNA-PK and its implications for NHEJ. Mol Cell, 81, 801-810. [LINK]

Choi, W.S., He, P., Pothukuchy, A., Gollihar, J., Ellington, A.D. & Yang, W. (2020) How a B family DNA polymerase has been evolved to copy RNA. PNAS, 117, 21274-21280. [LINK]

Chen, X.M., Cui, Y.X., Wang, H., Zhou, Z.H., Gellert, M. & Yang, W. (2020) How mouse RAG recombinase avoids DNA transposition. NSMB, 27, 127-133. [LINK]

Chen, X.M., Cui, Y.X., Best, R.B., Wang, H., Zhou, Z.H., Yang, W. & Gellert, M. (2020) Cutting antiparallel DNA strands in a single active site. NSMB, 27, 119-126. [LINK]

Gao Y. & Yang W. (2019). Different mechanisms for translocation by monomeric and hexameric helicases. Curr Opin Struct Biol, 61, 25-32. [LINK]

Wu, J., Samara, N.L., Kuraoko, I. & Yang, W. (2019) Evolution of inosine-specific Endonuclease V from bacterial DNase to eukaryotic RNase. Mol Cell, 76, 44-56. [LINK]

Yang, W., Seidman, M.M., Rupp, W.D. & Gao, Y. (2019) Replisome structure suggests mechanism for continuous fork progression and post-replication repair. DNA Repair, 81, 102658. [LINK]

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Weng, P.J., Gao, Y., Gregory, M.T., Wang, P., Wang, Y. & Yang, W. (2018) Bypassing a 8,5'-cyclo-2'-deoxyadenosine lesion by human DNA polymerase η at atomic resolution. PNAS, 115, 10660-10665. [LINK]

Samara N. & Yang, W. (2018) Cation trafficking propels RNA hydrolysis, NSMB, 25, 715-721. [LINK]

He, P. & Yang, W. (2018) Template and primer requirements for DNA Pol theta-mediated end joining, PNAS, 115, 7747-7752. [LINK]

Kim, M.S., Chuenchor, W., Chen, X.M., Cui, Y.X., Zhang, X., Zhou, Z.H., Gellert, M. & Yang, W. (2018) Cracking the DNA code for V(D)J recombination, Mol Cell, 70, 358-370. [LINK]

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Yang, W. & Gao, Y. (2018) Translesion and repair DNA polymerases: diverse structure and mechanism, Ann Rev Biochem, 83, 239-261.[LINK]

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Yang, W., Weng, P.J. & Gao, Y. (2016) A new paradigm of DNA synthesis: three-metal-ion catalysis, Cell & Bioscience, Sep 6, 2016, doi: 10.1186/s13578-016-0118-2. [LINK]

Gao, Y. & Yang, W. (2016) Capture of a third Mg2+ is essential for catalyzing DNA synthesis, Science, 352, 1334-1337. [LINK]

Yang, W. & Lee, Y.-S. (2015) A DNA hairpin model for Repeat Addition Processivity in telomere synthesis, NSMB, 22, 844-847. [LINK]

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Li, C.-L., Golebiowski, F., Onishi, Y., Samara, N., Sugasawa, K. & Yang, W. (2015) Tripartite DNA lesion recognition and verification by XPC, TFIIH and XPA in nucleotide excision repair, Mol Cell, 59, 1025-34. [LINK]

Kim, M.S., Lapkouski, M., Yang, W. & Gellert M. (2015) Crystal structure of the V(D)J recombinase RAG1-RAG2, Nature, 518, 507-511. [LINK]

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Lapkouski, M., Chuenchor, W., Kim, M.S., Gellert M. & Yang, W. (2015) Assembly pathway and characterization of the RAG1/2-DNA paired and signal-end complexes, JBC, 290, 14618-25. [LINK]

Park, S.Y., Park, J.E., Kim, T.S., et al., Yang, W. & Lee, K.S. (2014) "Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis". NSMB 21, 696-703. [LINK]

Gregory, M.T., Park, G.Y., Johnstone, T., Lee, Y.S., Yang, W. & Lippard, S.J. (2014) "Structural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage". PNAS 111, 9138-8. [LINK]

Rosta, E., Yang, W. & Hummer, G. (2014) "Calcium inhibition of Ribonuclease H1 two-metal ion catalysis".  J Am Chem Soc 136, 3137-3144. [LINK]

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Lee, Y.S., Gregory, M. T. & Yang, W. (2014) "Human Pol zeta purified with accessory subunits is active in translesion DNA synthesis and complements Pol eta in cisplatin bypass". PNAS 111, 2954-2959. [LINK]

Liu, Y., Yang, Y., Tang, T.S., Zhang, H., Wang, Z., Friedberg, E., Yang, W. & Guo, C. (2014) "Variants of mouse DNA polymerase kappa reveal a mechanism of efficient and accurate translesion synthesis past a benzo[a]pyrene dG adduct". PNAS 111, 1789-1794. [LINK]

Fox, D, III., Yan, Z., Chen, L., Zhao, Y., et a., Yang, W., & Wang, W. (2014) The histone-fold complex MHF is remodeled by FANCM to recognize branched DNA and protect genome stability. Cell Research, 24, 560-575. [LINK]

Yang, W. (2014) An overview of Y-Family DNA polymerase and a case study of human DNA polymerase eta. Biochemistry 53, 2793-2803. [LINK]

Opletalova, K., Bourillon, A, Yang, W., et al., & Sarasin A. (2014) "Correlation of phenotype/genotype in a cohort of 23 Xeroderma Pigmentosum-Variant patients reveals 12 new disease-causing POLH mutations".  Hum Mutat 35, 117-128. [LINK]

Mizuno, N., et al., Yang, W., Steve, A. C., Mizuuchi, K. & Ramon-Maiques, S. (2013) "MuB is an AAA+ ATPase that forms helical filaments to control target selection for DNA transposition". PNAS 110, 2441-50. [LINK]

Chung, S., Miller, J.T., Lapkouski, M., Tian, L., Yang, W. & Le Grice, S. F. (2013) “Examining the role of the HIV-1 reverse transcriptase p51 subunit in positioning and hydrolysis of RNA/DNA hybrids”. JBC 288, 16177-84. [LINK]

Li, F., Mao, G., Tong, D., Huang, J., Gu, L., Yang, W. & Li, G.-M. (2013). “The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSalpha”. Cell 153, 590-600. [LINK]

Nakamura, T., Zhao, Y., Yamagata, Y., Hua, Y.-J. & Yang, W. (2013). “Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed by time-resolved protein crystallography”. Biophysics 9, 31-36. [LINK]

Zhao, Y., Gregory, M. T., Biertümpfel, C., Hua, Y.-J., Hanaoka, F. & Yang, W. (2013). “Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta”. PNAS ePub on Apr 29. [LINK]

Lapkouski, M., Tian, L., Miller, J. T., Le Grice, S. F. & Yang, W. (2013). “Complexes of HIV-1 RT, NNRTI and RNA/DNA hybrid reveal a structure compatible with RNA degradation”. NSMB 20, 230-236. [LINK]

Yin, Z., Lapkouski, M., Yang, W. & Craigie, R. (2012). "Assembly of prototype foamy virus strand transfer complexes on product DNA bypassing catalysis of intergration". Protein Science 21, 1849-1857. [LINK]

Kuban, W, et al., Yang, W., Goodman, M. F. & Woodgate, R. (2012). "Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival". DNA Repair 11, 726-732. [LINK]

Nakamura, T., Zhao, Y., Yamagata, Y., Hua, Y.J. & Yang, W. (2012). "Watching DNA polymerase η make a phosphodiester bond". Nature 487, 196-201. [LINK]

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Zhao, Y., Biertümpfel, B., Gregory, M. T., Hua, Y.J., Hanaoka, F., & Yang, W. (2012). "Structural basis of human DNA polymerase η-mediated resistance to cisplatin". PNAS 109, 7269-7274. [LINK]

Gupta, S., Gellert, M. & Yang, W. (2011). "Mechanism of mismatch recognition revealed by human MutSbeta bound to unpaired DNA loops". NSMB 19, 72-78. [LINK]

Yang , W. (2011). “Surviving the sun: repair and bypass of DNA UV lesions”. Protein Science 20, 1781-89. [LINK]

Rosta, E., Nowotny, M., Yang, W. & Hummer, G. (2011). "Catalytic mechanism of RNA backbone cleavage by ribonuclease H from quantum mechanics/molecular mechanics simulations". JACS 133, 8934-41. [LINK]

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Grundy, G. J., Gellert, M. & Yang, W. (2010). “Auto-inhibition of DNA cleavage mediated by RAG1 and RAG2 is overcome by an epigenetic signal in V(D)J recombination”. PNAS 107, 22487-92. [LINK]

Yang, W. (2010). “Topoisomerases and site-specific recombinases: similarities in structure and mechanism”. Crit Rev Biochem Mol Biol 45, 520-534. [LINK]

Biertuempfel, C., Zhao, Y., et al. & Yang, W. (2010). “Structure and mechanism of human DNA polymerase h”. Nature 465, 1044-1048. [LINK]

Yang, W. (2010). “Lessons learnt from UvrD helicase: mechanism for directional movement”. Ann. Rev. Biophys. 39, 367-385. [LINK]

Nowotny, M & Yang, W. (2009). “Structural and functional modules in RNA dinterference”. Curr. Opin. Struct. Biol.19, 286-293. [LINK]

Gu, H. Z., Yang, W. & Seeman, N. C. (2010). “DNA scissors device used to measure MutS binding to DNA mis-pairs”, JACS 132, p4252-4357. [LINK]

Wang, F. and Yang, W. (2009). “Structural insight into translesion synthesis by DNA Pol II”.  Cell 139, 1279-1389. [LINK]

Castillo-Acosta VM, Ruiz-Perez, LM, Yang, W, Gonzalez-Pacanowska, D & Vidal AE (2009). “Identification of a residue critical for the excision of 3´-blocking ends in apurinic/apyrimidinic endonucleases of the Xth family”. NAR 37, 1829-42. [LINK]

Grundy, G. J., Ramón-Maiques, S., et al., Gellert, M. & Yang, W. (2009). “Initial stages of V(D)J recombination: the organization of RAG1/2 and RSS DNA in the post-cleavage complex’. Mol. Cell 35, 217-227. [LINK]

Yang, W. (2008). “An equivalent metal ion in one- and two-metal ion catalysis”. Nat. Struct. Mol. Biol. 15, p 1228-31. [LINK]

Nowotny, M., Cerritelli, S. M., Ghirlando, R., Gaidamakov, S. A., Crouch, R. J. and Yang, W. (2008). “Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD”. EMBO J. 27, 1172-81. [LINK]

Chu, G & Yang, W. (2008). “Here comes the sun: recognition of UV-damaged DNA”. Cell 135, p172-4. [LINK]

Van Duyne G. D. & Yang W. (2008). “Protein-nucleic acid complexes: large, small, old and new”, Curr. Opin. Struct. Biol. 18, 67-69. [LINK]

Ramón-Maiques, S., et al. and Yang, W. (2007). “The PHD finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2”. PNAS 104, 18993-8. [LINK]

Matthews, A. G. W., Kuo, A. J., Ramón-Maiques, R., et al., Yang, W., Gozani, O. and Oettinger, M. A. (2007). “RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination”. Nature 450, 106-10. [LINK]

Nowotny, M., Gaidamakov, S. A., Ghirlando, R., Cerritelli, S. M., Crouch, R. J. and Yang, W. (2007). “Structure of human RNase H1 complexed with an RNA/DNA hybrid: insight into HIV reverse transcription”. Mol. Cell 28, 264-276. [LINK]

Biertumpfel, C., Yang, W. and Suck D. (2007). “Crystal structure of T4 endonuclaese VII resolving a Holliday junction”. Nature 449, 616-620. [LINK]

Yang, W. and Woodgate, R. (2007). “What a difference a decade makes: insights into translesion DNA synthesis”. PNAS 104, 15591-15598. [LINK]

Yang,  W. (2007). “Structure and mechanism for DNA lesion recognition”. Cell Res. 18, 184-97. [LINK]

Yang, W. (2007). “Human MuLa: the jack of all trades in mismatch repair is also an endonuclease”. DNA Repair 6,135-9. [LINK]

Lee, J. Y. and Yang, W. (2006). “UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke”. Cell 127, 1349-1360. [LINK]

Fiala, K. A., Brown, J. A., Ling, H., Kshetry, A. K., Zhang, J., Taylor, J. S., Yang, W., Suo, Z. (2006). “Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase”. JMB 365, 590-602. [LINK]

Nowotny, M. and Yang, W. (2006). “Stepwise analyses of metal ions in RNase H catalysis: from substrate destabilization to product release”. EMBO J. 25. 1924-33. [LINK]

Yang, W., Lee, J. Y. and Nowotny, M. (2006). “Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity”. Mol Cell, 22, 5-13. [LINK]

Yang, W.  (2006). “Poor base stacking at DNA lesions may initiate recognition by many repair proteins”. DNA Repair, ePub ahead of print, March 27, 2006; 5, 654-66, [LINK]

Yang W.  & Van Duyne G. D. (2006). “Protein-nucleic acid interactions: from A(ugonaute) to X(PF)”, Curr. Opin. Struct. Biol. 16, 1-4.

Yang W. (2005). “Portraits of a Y-family DNA polymerase”, FEBS Lett. 579, 868-72. [LINK]

Lee, J. Y., Chang, J., Joseph, N. Ghirlando, R., Desirazu, N. R., and Yang, W. (2005). “MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage”. Mol. Cell 20, 155-166. [LINK]

Vaisman A., Ling, H., Woodgate, R., and Yang, W. (2005). “Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis”.  EMBO J. 24, 2957-2967. [LINK]

Nowotny, M., Gaidamakov, S. A., Crouch, R. J., and Yang., W. (2005). “Crystal structures of RNase H bound to an RNA: substrate specificity and metal-dependent catalysis”. Cell 121, 1005-16. [LINK]

Guarné, A., Brendler T.,  Zhao, Q., Ghirlando, R., Austin, S., and Yang, W. (2005). “Crystal structure of a SeqA-N filament: implications for DNA replication and chromosome organization”.  EMBO J. 24, 1502-1511. [LINK]

Guarné, A., Ramon-Maiques, S., Wolff, E. M., Ghirlando, R., Hu, X., Miller, J. H., and Yang, W. (2004). “Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair”.  EMBO J. 23, 4134-45. [LINK]

Vidal, A. E., Kannouche, P, Podust, V. N., Yang, W., Lehmann, A. R., and Woodgate, R. (2004).  “PCNA-dependent coordination of the biological functions of human DNA polymerase i”.  JBC 279, 48360-68. [LINK]

Boudsocq, B., Kokoska, R., Plosky, B. S., Vaisman, A, Ling, H., Kunkel, T. A., Yang, W. and Woodgate, R. (2004). “Investigating the role of the little finger domain of Y-family DNA polymerase in low-fidelity synthesis and translesion replication”, JBC 279, 32932-32940. [LINK]

Lipkin, S. M., Rozek, L., Rennert, G., Yang, W., Peng-Chic J., Kokoris, M., Hacia, J., Fodor, S., Ji, H., Fearon, E., Lynch, H., Collins, F. and Gruber, S. B. (2004). “Identification of Novel DNA mismatch repair gene variants and association with population based conlorectal cancer susceptibility”, Nat. Genet. 36, 694-699.

Ling, H, Boudsocq, F., Woodgate, R. and Yang, W. (2004). “Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift”, Mol Cell 13, 751-762. [LINK]

Ling, H, Sayer, J.M., Plosky, B.S., Yagi, H., Boudsocq, F., Woodgate, R., Jerina, D. M. and Yang, W. (2004). “Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase”. PNAS 101, 2265-2269. [LINK]

Yang, W. (2003). “Pruning DNA: structure-specific endonucleases (XPF/Rad1/Mus81)”.  Structure 11, 365-366. [LINK]

Modesti, M., Junop, M. S., Ghirlando, R., van de Rakt, M., Gellert, M., Yang, W. and Kanaar R. (2003). “Tetrameerization and DNA ligase IV interaction of XRCC4 are mutually exclusive”.  JMB 334, 215-228. [LINK]

Ling, H, Boudsocq, F., Plosky, B., Woodgate, R. and Yang, W. (2003). “Replication of a cis-syn thymine dimer at atomic resolution”. Nature 424, 1083-1087 (Internet advanced publication on Aug. 6, 2003). [LINK]

Hu, X., Machius, M., and Yang. W. (2003). “Monovalent cation dependence and pre- ference of GHKL ATPases and kinases”.  FEBS Lett544, 268-273. [LINK]

Yang, W., Rogozin, I.B., and Koonin, E.V. (2003). “Yeast POL5 is an evolutionarily conserved regulator of rDNA transcription unrelated to any known DNA polymerases” Cell Cycle 2, 120-122. [LINK]

Alani, E., Lee, J. Y., Schofield, M. J., Kijas, A. W., Hsieh, P., and Yang, W. (2003). “Crystal structure and biochemical analysis of the MutS-ADP·BeF3- complex suggests a conserved mechanism for ATP interactions in mismatch repair” JBC 278, pp 16088-16094. [LINK]

Junop, M. S., Yang, W., Funchain, P., Clendenin, W. and Jeffrey H. Miller (2003). “In vitro and in vivo studies of MutS, MutL and MutH mutants: correlation of mismatch repair and DNA recombination” DNA Repair 2, 387-405. [LINK]

Yang, W. (2003). “DNA damage repair polymerase Y”.  Curr. Opin. Struct. Biol. 13, 23-30. [LINK]

Drotschmann, K., Yang, W. and Kunkel, T. A.  (2002).  “Evidence for ssequential action of two ATPase active sites in yeast Msh2-Msh6” DNA Repair 1, 743-753. [LINK]

Guarné, A., Zhao, Q.-H. Ghirlando, R.. and Yang, W. (2002).  “SeqA complexed with hemimethylated DNA: negative modulation of E. coli replication initiation” Nat. Struct. Biol. 9, 839-843. [LINK]

Boudsocq, F., Ling, H., Yang, W. and Woodgate R. (2002). “Structure-based interpretation of missense mutations in Y-family DNA polymerases and their implications for polymerase function and lesion bypass”. DNA Repair 1, 343-358. [LINK]

Jones, J. M., Gellert, M. and Yang, W. (2001). “A Ku bridge over broken DNA.” Structure 9, 881-884. [LINK]

Drotschmann, K., Yang, W., Brownewell, F. E., Kool, E. T. and Kunkel, T. A. (2001). “Asymmetric recognition of DNA local distortion: structure-based functional studies of Eukaryotic Msh2-Msh6”. JBC 276, 46225-46229. [LINK]

Wang, J.-J., Ling H., Yang, W and Craigie, R. (2001). “Structure of a two-domain fragment of HIV-1 integrase: implications for domain organization in the intact protein”. EMBO J. 20, 7333-7343. [LINK]

Ling, H., Boudsocq, F., Woodgate, R. and Yang, W (2001). “Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication”. Cell 107, 91-102. [LINK]

Guarné, A., Junop, M. S. and Yang, W. (2001). “Structure and function of the N-terminal 40kDa fragment of human PMS2: a monomeric GHL ATPase.” EMBO J. 20, 5521-5531. [LINK]

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